First I tried installing MU with subdomains enabled. i figured out that my godaddy host doesn't use the wildcard, so I tried installing it into a subdirectory /blogs/
After that process, it looks like the CSS isnt working or something. Like its not formatted. I thought it was my FTP corrupting the files. I uploaded and installed several times, and it turned out the same way. I uploaded the zip file and extracted it on the server to see if that would stop any data corruption. Same result. When I try logging in, to the pages, even though they look weird, it goes to the wrong address: http:/com/myfiles...something. I can't remember. It wasn't right.
I already have a wordpress install on the main directory, but I dont think that could be screwing it up.