I did a manual update from 2.7.1 to 2.8.4a and everything is working alright, but now I'm missing the Site Admin menu. I'm logged in as admin. The installation files I used were WPMU files, not single user wordpress, and all the blogs work just fine.
If I try to access wp-admin/wpmu-blogs.php I get this error:
You do not have permission to access this page.
But I'm logged in as admin, and it says "Howdy, admin" in the top right corner.
Any ideas?