In hindsight, I probably should have know better. Here's what happened:
A few days ago I switched to pretty permalinks and all was well. Then I needed to switch to Linux hosting since I was installing WPMU. After that whole change, permalinks didn't work. The links looked right, but when you try to click, it takes you to the 404 page. So I read a few forums, and it looked like my htaccess file was named incorrectly (was htaccess.dist, rather than .htaccess) so I went in through FTP and changed it. Now, I get a 500 Internal Server error on all sites and can't access my WPMU admin panel.
Please help and please tell me a reinstall is not needed. I think I might cry if you tell me that. Thanks, I really appreciate all the help I've been getting from this wonderful community!