The plugin Most Popular Categories by Posts http://bloghelper.is-there.net/plugins/wordpress/most-popular-categories-by-posts/
was rendered no working by the upgrade to 2.3. To fix it replace the select statement around line 17 with the following.
SELECT p.ID, p.post_title, p.post_date, c.term_id as cat_ID, c.name as cat_name, p2c.object_id as post_id, p2c.term_taxonomy_id as category_id
FROM $wpdb->posts p
LEFT JOIN $wpdb->term_relationships p2c
on p.ID = p2c.object_id
LEFT JOIN $wpdb->term_taxonomy tt
ON p2c.term_taxonomy_id = tt.term_taxonomy_id
LEFT JOIN $wpdb->terms c
ON tt.term_id = c.term_id
WHERE post_status = 'publish'
AND p.post_date > DATE_ADD(CURDATE(), INTERVAL -$zmpc_days DAY)
ORDER BY p.post_date DESC
Also looking at the code it seems to make sense to do all the counting in SQL rather than php, but I've not yet done that in this code.