It would seem that using thickbox and the flash media uploader on the same page as eachother doesn't work so well. Implementing thickbox by itself works fine, or the uploader by itself is fine, but as soon as you enqueue media-upload for the uploader, it breaks any thickbox link on that page.
Is there a way around this? I would like to use them both on the same plugin page, but as of right now it's one or the other.
I would like to avoid adding my own lightbox when thickbox is already part of the core scripts.