Grab revision 1076 from Subversion which will hopefully fix most of the bugs reported earlier.
I couldn't reproduce the login or tag permalink errors, but I reverted changes to get_userdatabylogin() and changed wp_safe_redirect() so it accepts the $current_site->domain as a safe domain. That will hopefully fix login issues for site_admins.
Upload space functions have been fixed.
Registration is now closed by default. There's a big ugly notice on the signup page so any budding site admin will know where to go to turn it back on again.
The timeline is a good way of checking what has changed.
Download it by visiting the page below and clicking on the Zip link: http://trac.mu.wordpress.org/browser/trunk?rev=1076