Still working with the same problematical blog. After hassling with the database for longer than I care to admin, I decided to just reinstall. (Hmmmm... can't remember if the original was 2.5 or 2.6).
Uploaded the 2.6.2 files, leaving the config file AND my wp-content folders alone.
Site came up - had an admin password issue (now resolved - I'm writing these things down in a file this time!).
All the previous data is in the database (I can see the original entries, blogs, etc). Only 1 blog is showing up - and there is no reference anywhere on the dashboard to multiple blogs (or even an option to add another blog - just users.)
The bottom of the screen reads
"Thank you for creating with WordPress | Documentation | Feedback | Version 2.6.2"
So was I "stooopid" and downloaded the wrong thing (I don't think so) - does this coding not like the database setup - is there something I need to tweak in the database....
The GOOD news is that the site no longer whines about the domain being wrong.......that is at least an improvement. AND the modified theme I built is showing up, as are the plugins.
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I hope one day to pass along the help I've been given here!